PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493615.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 412aa    MW: 46061.4 Da    PI: 9.7006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053360379323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  Cgk+F  ++ L++H++++
  XP_016493615.1 360 CAQCGKPF-KPEKLHTHMKSC 379
                     9*******.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061368.8E-4132188IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVKSCNTPTP QHTLKRLMEA QTQGGAEVRR LHIIYFLSRK GRIEHPHLIR VHHFSRNGIR  60
LRDVKRWLGE LRGKDMPESF AWSYKRKYKT GYVWQDLLDE DLITPISDNE YVLKGSEVSK  120
DVKCGEKGVL ATMQKEQTKQ EDHIQDPFMD SSKKTPSEIE EESQNIASEP STLTTDSPEL  180
QEEEEKDSEN KTIQEKVNNF ENNSFSSSSS FGSKKTKMKT EDHVKENGEK ISAQSSEKPT  240
KNPSFNKSRS YSNGASSIFR NLITCGAVDT NDSGIVPIRK NRSSFSSSGE KAVSFSSEIC  300
RAEKVGGSQR IFGTAWNQQH QHTNGRKSCD GAYSSSKNKN EFGSRRSVSA NYKPVNGPNC  360
AQCGKPFKPE KLHTHMKSCK GMKAPAKGAN SVTSATEKTS KVDSVSGTFL TH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493615.10.0PREDICTED: protein UPSTREAM OF FLC-like isoform X1
TrEMBLA0A0V0I2720.0A0A0V0I272_SOLCH; Uncharacterized protein
STRINGPGSC0003DMT4000798950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52061315